• DocumentCode
    3179205
  • Title

    Similar subsequence retrieval from two time series data using homology search

  • Author

    Nishii, Takuma ; Hiroyasu, Tomoyuki ; Yoshimi, Masato ; Miki, Mitsunori ; Yokouchi, Hisatake

  • Author_Institution
    Grad. Sch. of Eng., Doshisha Univ., Kyoto, Japan
  • fYear
    2010
  • fDate
    10-13 Oct. 2010
  • Firstpage
    1062
  • Lastpage
    1067
  • Abstract
    We propose a method for extracting the most similar subsequences from two time series data by quantizing them and performing a homology search. The homology searches, such as BLAST and SW, are string search algorithms. Therefore, time series data should be quantized. SAX and EIAD were applied as quantization methods, and their effectiveness was examined by experiment. According to the experiments, time series data sets were classified into four types of time series data set, and we discuss the characteristics of SAX and EIAD.
  • Keywords
    bioinformatics; data handling; information retrieval; time series; EIAD; SAX; homology search; quantization methods; similar subsequence retrieval; string search algorithms; time series data; Biology; Homology Search; Requantization; Similarity Search; Smith-Waterman Algorithm; Time Series Data;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Systems Man and Cybernetics (SMC), 2010 IEEE International Conference on
  • Conference_Location
    Istanbul
  • ISSN
    1062-922X
  • Print_ISBN
    978-1-4244-6586-6
  • Type

    conf

  • DOI
    10.1109/ICSMC.2010.5641809
  • Filename
    5641809