Title :
Modeling and Management of Signal Transduction Pathways with Live Sequence Charts
Author :
Täubner, Claudia ; Mathiak, Brigitte ; Eckstein, Silke
Author_Institution :
Tech. Univ. of Braunschweig, Braunschweig
Abstract :
In this paper we present our approach to model and simulate signal transduction pathways as discrete event systems by means of Live Sequence Charts (LSCs) and the Play-Engine tool. To reach this goal we conceptually mapped signal transduction pathways to LSCs and developed an integrated software architecture to generate pathways as discrete event models automatically out of the database.
Keywords :
biochemistry; biology computing; biomembranes; discrete event simulation; discrete event systems; software architecture; discrete event systems; integrated software architecture; live sequence charts; signal transduction pathways; Biological system modeling; Cells (biology); Databases; Logic; Petri nets; Proteins; Sequences; Signal generators; Signal processing; Stochastic processes;
Conference_Titel :
Data Mining Workshops, 2007. ICDM Workshops 2007. Seventh IEEE International Conference on
Conference_Location :
Omaha, NE
Print_ISBN :
978-0-7695-3019-2
Electronic_ISBN :
978-0-7695-3033-8
DOI :
10.1109/ICDMW.2007.48
