DocumentCode :
3199715
Title :
eXtasy simplified-towards opening the black box
Author :
Popovic, Dusan ; Sifrim, Alejandro ; Moreau, Yves ; De Moor, Bart
Author_Institution :
Dept. of Electr. Eng., KU Leuven, Leuven, Belgium
fYear :
2013
fDate :
18-21 Dec. 2013
Firstpage :
24
Lastpage :
28
Abstract :
Exome sequencing remarkably simplifies the search for mutations causing rare monogenic disorders. Still, due to a big number of potential candidate variants, computational methods are needed to facilitate this process. Recently, an algorithm based on genomic data fusion has been proposed in this context (eXtasy), which exhibits highly competitive performances among the state of the art methods. Nonetheless, being based on a Random Forest classifier, its core model is characterized by a prohibitive size, slow execution speed and difficulties associated with gaining insights in the decision-making process. Here we propose a simplification of the original eXtasy algorithm that retains superior ranking capability of former without suffering from the both high complexity and low interpretability.
Keywords :
bioinformatics; decision making; genomics; learning (artificial intelligence); pattern classification; sensor fusion; decision-making process; eXtasy algorithm; exome sequencing; genomic data fusion; mutations; random forest classifier; Bioinformatics; Classification algorithms; Context; Data integration; Decision support systems; Genomics; Sequential analysis; decision trees; eXtasy; genomic data fusion; hybrid sequential system; interpretable model; random forest; rare genetic disorders; variant prioritization;
fLanguage :
English
Publisher :
ieee
Conference_Titel :
Bioinformatics and Biomedicine (BIBM), 2013 IEEE International Conference on
Conference_Location :
Shanghai
Type :
conf
DOI :
10.1109/BIBM.2013.6732713
Filename :
6732713
Link To Document :
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