DocumentCode :
3208745
Title :
A New Recursive Approach for Reconstructing Metabolic Networks from KEGG
Author :
Zhou, Tingting ; Yung, Samuel K F ; Wang, Zhenghua ; Zhu, Yunping
Author_Institution :
Nat. Lab. for Paralleling & Distrib. Process., Nat. Univ. of Defense Technol., Changsha, China
fYear :
2009
fDate :
17-19 Dec. 2009
Firstpage :
510
Lastpage :
515
Abstract :
The high-quality network reconstruction from metabolites, enzymes and reactions is the first essential step for the studies on the metabolic networks. Previously the approach based on the KEGG/LIGAND database can only reconstruct the organism-level metabolic networks and the network quality is quite doubtful. In this paper we propose a new recursive approach to reconstruct metabolic networks. The data selection mechanism of KEGG/PATHWAY ensures that metabolic networks are parsimonious but reliable. The KO system makes it possible to generate networks hierarchically. The KEGG web service manages to keep the data up-to-date. Results of comparison with the previous approach show our new approach is practical and reliable.
Keywords :
Web services; biology computing; medical information systems; microorganisms; KEGG Web service; KEGG database; KO system; Kyoto Encyclopedia of Genes and Genomes; LIGAND database; high-quality network reconstruction; metabolic networks reconstruction; organism-level metabolic networks; recursive approach; Biochemistry; Bioinformatics; Biological systems; Computer networks; Databases; Distributed processing; Genomics; Laboratories; Organisms; Web services; KEGG; metabolic network; network reconstruction; web service;
fLanguage :
English
Publisher :
ieee
Conference_Titel :
Frontier of Computer Science and Technology, 2009. FCST '09. Fourth International Conference on
Conference_Location :
Shanghai
Print_ISBN :
978-0-7695-3932-4
Electronic_ISBN :
978-1-4244-5467-9
Type :
conf
DOI :
10.1109/FCST.2009.28
Filename :
5392870
Link To Document :
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