DocumentCode
3230347
Title
ICA based supervised gene classification of Microarray data in yeast functional genome
Author
Xin-guo, Lu ; Ya-ping, Lin ; Wen, Yue ; Hai-jun, Wang ; Si-Wang, Zhou
Author_Institution
Coll. of Comput. & Commun., Hunan Univ., Changsha
fYear
2005
fDate
1-1 July 2005
Lastpage
638
Abstract
In order to study the function of unknown genes in functional genome, traditional supervised classification algorithms were applied to gene classification with Microarray expression profiles. But the results show that the classification precision is poor and the accuracies achieved for different classes varies dramatically. Because the gene expression profiles are mixed with different biologically meaningful information and there is much noise in the genomic-scale dataset. Independent component analysis (ICA) is a method for multi-channel signal processing to separate mixed signals. Through linear transformation, ICA minimizes the statistical dependence of the components of the represented variables. So in this paper ICA based supervised gene classification in yeast functional genome is presented, which is a hybrid method of ICA with supervised classification approaches. This method recognizes the hidden patterns under the gene expression profiles and reduces the noise that is abundant in the gene expression profiles efficiently. Experimental results show that this method improves the performance of precision and recall
Keywords
biology computing; classification; genetics; independent component analysis; molecular biophysics; ICA based supervised gene classification; classification precision; gene expression; genomic-scale dataset; independent component analysis; linear transformation; microarray data; microarray expression profiles; multichannel signal processing; supervised classification algorithms; yeast functional genome; Bioinformatics; Biomedical signal processing; Classification algorithms; Fungi; Gene expression; Genomics; Independent component analysis; Pattern recognition; Signal processing; Signal processing algorithms;
fLanguage
English
Publisher
ieee
Conference_Titel
High-Performance Computing in Asia-Pacific Region, 2005. Proceedings. Eighth International Conference on
Conference_Location
Beijing
Print_ISBN
0-7695-2486-9
Type
conf
DOI
10.1109/HPCASIA.2005.49
Filename
1592334
Link To Document