• DocumentCode
    3231151
  • Title

    A translocation, insertion and deletion distance formula for sorting genomes

  • Author

    Hao Fanchang ; Luan Junfeng ; Zhu Daming ; Feng Haodi

  • Author_Institution
    Sch. of Comput. Sci. & Technol., Shandong Univ., Jinan, China
  • fYear
    2009
  • fDate
    25-28 July 2009
  • Firstpage
    1843
  • Lastpage
    1846
  • Abstract
    Sorting genomes by translocation, insertion and deletions has already been researched for years such as in. However, the authors in did not consider the case that a gene in the target genome does not appear in the source genome. Translocation is a reciprocal operation in sorting genomes, and deletion and insertion are reciprocal to each other. In this paper, we first correct an error in the algorithm in, and then propose an algorithm to sort the genomes with different genes using translocation, insertion and deletion in polynomial time O(n3). We also analyze the distance between the original genome and sorted genome.
  • Keywords
    bioinformatics; genetics; genomics; molecular biophysics; deletion distance formula; gene insertion; gene translocation; genome sorting; polynomial time; Algorithm design and analysis; Bioinformatics; Biological cells; Computer science; Computer science education; Educational technology; Error correction; Genomics; Polynomials; Sorting; deletion; distance formula; insertion; sorting genomes; translocation;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Computer Science & Education, 2009. ICCSE '09. 4th International Conference on
  • Conference_Location
    Nanning
  • Print_ISBN
    978-1-4244-3520-3
  • Electronic_ISBN
    978-1-4244-3521-0
  • Type

    conf

  • DOI
    10.1109/ICCSE.2009.5228260
  • Filename
    5228260