Title :
Simulating stretching dynamics of DNA with dissipative particle dynamics
Author :
Zuo, Chun Cheng ; Ji, Feng ; Cao, Qian Qian ; Sun, Xiang Dong
Author_Institution :
Coll. of Mech. Sci. & Eng., Jilin Univ., Jilin
Abstract :
The stretching dynamics of a semiflexible chain by introducing time-independent tension is presented in this paper. Dissipative particle dynamics is used as the leading method to simulate the stretching behaviors of polymer by introducing the bead-rod or bead-spring type particles. The numerical results show us that in the low tension regime the flexibility can play an important role during the stretching process. It is also can be found that the larger tension leads to the increase of the fraction extension in the intermediate tension regime. And in the high tension regime, the fast equilibrium can be obtained.
Keywords :
DNA; molecular dynamics method; DNA; bead-rod type particles; bead-spring type particles; dissipative particle dynamics; fraction extension; semiflexible chain; stretching dynamics; time-independent tension; Biomedical optical imaging; Computational modeling; DNA; Fluctuations; Fluid dynamics; Iron; Manipulator dynamics; Optical microscopy; Optical polymers; Optical scattering; DNA; dissipative particle dynamics; stretching dynamics;
Conference_Titel :
Nano/Micro Engineered and Molecular Systems, 2008. NEMS 2008. 3rd IEEE International Conference on
Conference_Location :
Sanya
Print_ISBN :
978-1-4244-1907-4
Electronic_ISBN :
978-1-4244-1908-1
DOI :
10.1109/NEMS.2008.4484316