• DocumentCode
    3232744
  • Title

    Simulating stretching dynamics of DNA with dissipative particle dynamics

  • Author

    Zuo, Chun Cheng ; Ji, Feng ; Cao, Qian Qian ; Sun, Xiang Dong

  • Author_Institution
    Coll. of Mech. Sci. & Eng., Jilin Univ., Jilin
  • fYear
    2008
  • fDate
    6-9 Jan. 2008
  • Firstpage
    192
  • Lastpage
    195
  • Abstract
    The stretching dynamics of a semiflexible chain by introducing time-independent tension is presented in this paper. Dissipative particle dynamics is used as the leading method to simulate the stretching behaviors of polymer by introducing the bead-rod or bead-spring type particles. The numerical results show us that in the low tension regime the flexibility can play an important role during the stretching process. It is also can be found that the larger tension leads to the increase of the fraction extension in the intermediate tension regime. And in the high tension regime, the fast equilibrium can be obtained.
  • Keywords
    DNA; molecular dynamics method; DNA; bead-rod type particles; bead-spring type particles; dissipative particle dynamics; fraction extension; semiflexible chain; stretching dynamics; time-independent tension; Biomedical optical imaging; Computational modeling; DNA; Fluctuations; Fluid dynamics; Iron; Manipulator dynamics; Optical microscopy; Optical polymers; Optical scattering; DNA; dissipative particle dynamics; stretching dynamics;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Nano/Micro Engineered and Molecular Systems, 2008. NEMS 2008. 3rd IEEE International Conference on
  • Conference_Location
    Sanya
  • Print_ISBN
    978-1-4244-1907-4
  • Electronic_ISBN
    978-1-4244-1908-1
  • Type

    conf

  • DOI
    10.1109/NEMS.2008.4484316
  • Filename
    4484316