• DocumentCode
    3238939
  • Title

    Integrative analysis of multi-modal correlated imaging-genomics data in glioblastoma

  • Author

    Olivares, Rolando J. ; Rao, Akhila ; Rao, Ganeswara ; Morris, Jeffrey S. ; Baladandayuthapani, Veerabhadran

  • Author_Institution
    Dept. of Stat., Texas A&M Univ., College Station, TX, USA
  • fYear
    2013
  • fDate
    17-19 Nov. 2013
  • Firstpage
    5
  • Lastpage
    8
  • Abstract
    We propose a method to integrate high-dimensional genomics datasets across multiple platforms with multiple correlated imaging outcomes. This framework uses a hierarchical model to integrate biological relationships across platforms to identify genes that associate with correlated outcomes. Our two-stage hierarchical model uses the information shared across the platforms and increases the predictive power to identify the relevant genes. We assess the performance of our proposed method through simulations and apply to data obtained from the Cancer Genome Atlas Glioblastoma Multiforme dataset. Our proposed method discovers multiple copy number and microRNA regulated genes that are related to patients´ imaging outcomes in glioblastoma.
  • Keywords
    bioinformatics; biomedical imaging; data analysis; genomics; tumours; cancer genome atlas glioblastoma multiforme dataset; integrative analysis; microRNA regulated genes; multimodal correlated imaging-genomics data; multiple correlated imaging outcomes; patients imaging outcomes; relevant genes identification; two-stage hierarchical model; Bioinformatics; Biological system modeling; Cancer; Data models; Genomics; Imaging; Tumors; Bayesian Analysis; imaging-genomics; integrative genomic analysis; lasso penalization; multiple outcomes; sensitivity; specificity;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Genomic Signal Processing and Statistics (GENSIPS), 2013 IEEE International Workshop on
  • Conference_Location
    Houston, TX
  • Print_ISBN
    978-1-4799-3461-4
  • Type

    conf

  • DOI
    10.1109/GENSIPS.2013.6735914
  • Filename
    6735914