DocumentCode
3238939
Title
Integrative analysis of multi-modal correlated imaging-genomics data in glioblastoma
Author
Olivares, Rolando J. ; Rao, Akhila ; Rao, Ganeswara ; Morris, Jeffrey S. ; Baladandayuthapani, Veerabhadran
Author_Institution
Dept. of Stat., Texas A&M Univ., College Station, TX, USA
fYear
2013
fDate
17-19 Nov. 2013
Firstpage
5
Lastpage
8
Abstract
We propose a method to integrate high-dimensional genomics datasets across multiple platforms with multiple correlated imaging outcomes. This framework uses a hierarchical model to integrate biological relationships across platforms to identify genes that associate with correlated outcomes. Our two-stage hierarchical model uses the information shared across the platforms and increases the predictive power to identify the relevant genes. We assess the performance of our proposed method through simulations and apply to data obtained from the Cancer Genome Atlas Glioblastoma Multiforme dataset. Our proposed method discovers multiple copy number and microRNA regulated genes that are related to patients´ imaging outcomes in glioblastoma.
Keywords
bioinformatics; biomedical imaging; data analysis; genomics; tumours; cancer genome atlas glioblastoma multiforme dataset; integrative analysis; microRNA regulated genes; multimodal correlated imaging-genomics data; multiple correlated imaging outcomes; patients imaging outcomes; relevant genes identification; two-stage hierarchical model; Bioinformatics; Biological system modeling; Cancer; Data models; Genomics; Imaging; Tumors; Bayesian Analysis; imaging-genomics; integrative genomic analysis; lasso penalization; multiple outcomes; sensitivity; specificity;
fLanguage
English
Publisher
ieee
Conference_Titel
Genomic Signal Processing and Statistics (GENSIPS), 2013 IEEE International Workshop on
Conference_Location
Houston, TX
Print_ISBN
978-1-4799-3461-4
Type
conf
DOI
10.1109/GENSIPS.2013.6735914
Filename
6735914
Link To Document