DocumentCode :
3238939
Title :
Integrative analysis of multi-modal correlated imaging-genomics data in glioblastoma
Author :
Olivares, Rolando J. ; Rao, Akhila ; Rao, Ganeswara ; Morris, Jeffrey S. ; Baladandayuthapani, Veerabhadran
Author_Institution :
Dept. of Stat., Texas A&M Univ., College Station, TX, USA
fYear :
2013
fDate :
17-19 Nov. 2013
Firstpage :
5
Lastpage :
8
Abstract :
We propose a method to integrate high-dimensional genomics datasets across multiple platforms with multiple correlated imaging outcomes. This framework uses a hierarchical model to integrate biological relationships across platforms to identify genes that associate with correlated outcomes. Our two-stage hierarchical model uses the information shared across the platforms and increases the predictive power to identify the relevant genes. We assess the performance of our proposed method through simulations and apply to data obtained from the Cancer Genome Atlas Glioblastoma Multiforme dataset. Our proposed method discovers multiple copy number and microRNA regulated genes that are related to patients´ imaging outcomes in glioblastoma.
Keywords :
bioinformatics; biomedical imaging; data analysis; genomics; tumours; cancer genome atlas glioblastoma multiforme dataset; integrative analysis; microRNA regulated genes; multimodal correlated imaging-genomics data; multiple correlated imaging outcomes; patients imaging outcomes; relevant genes identification; two-stage hierarchical model; Bioinformatics; Biological system modeling; Cancer; Data models; Genomics; Imaging; Tumors; Bayesian Analysis; imaging-genomics; integrative genomic analysis; lasso penalization; multiple outcomes; sensitivity; specificity;
fLanguage :
English
Publisher :
ieee
Conference_Titel :
Genomic Signal Processing and Statistics (GENSIPS), 2013 IEEE International Workshop on
Conference_Location :
Houston, TX
Print_ISBN :
978-1-4799-3461-4
Type :
conf
DOI :
10.1109/GENSIPS.2013.6735914
Filename :
6735914
Link To Document :
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