Title :
A random polygons model of glandular structures in colon histology images
Author :
Sirinukunwattana, Korsuk ; Snead, David R. J. ; Rajpoot, Nasir M.
Author_Institution :
Dept. of Comput. Sci. & Eng., Qatar Univ., Doha, Qatar
Abstract :
In this paper, we present a stochastic model for glandular structures in Hematoxylin and Eosin stained histology images, choosing colon tissue as an example. The proposed Random Polygons Model (RPM) treats each glandular structure in an image as a polygon made of a random number of vertices, where the vertices represent approximate locations of epithelial nuclei. We formulate the RPM as a Bayesian inference problem by defining a prior for spatial connectivity and arrangement of neighboring epithelial nuclei and likelihood about the presence of glandular structure. The inference is made via a Reversible-Jump Markov Chain Monte Carlo simulation. Our experimental results show that the RPM yields favorable results, both quantitatively and qualitatively, for extraction of glandular regions in histology images of human colon tissue.
Keywords :
Bayes methods; Markov processes; Monte Carlo methods; biological organs; biological tissues; biomedical optical imaging; feature extraction; geometry; inference mechanisms; medical image processing; random processes; Bayesian inference problem; RPM formulation; approximate epithelial nuclei location; colon histology image; glandular region extraction; glandular structure presence likelihood; hematoxylin-eosin stained histology image; human colon tissue image; image glandular structure; neighboring epithelial nuclei arrangement; qualitatively analysis; quantitative analysis; random polygon model; random vertex number; reversible-jump Markov chain Monte Carlo simulation; spatial connectivity; stochastic model; Bayes methods; Colon; Glands; Image segmentation; Markov processes; Monte Carlo methods; Silicon; Bayesian inference; Gland modeling; Histology image analysis; Random polygons; Reversible-Jump Markov chain Monte Carlo;
Conference_Titel :
Biomedical Imaging (ISBI), 2015 IEEE 12th International Symposium on
Conference_Location :
New York, NY
DOI :
10.1109/ISBI.2015.7164168