Title :
Low resolution 3D reconstructions of viruses from X-ray crystal diffraction data
Author :
Zheng, Yibin ; Li, Tao ; Doerschuk, Peter C. ; Johnson, John E.
Author_Institution :
Sch. of Electr. & Comput. Eng., Purdue Univ., West Lafayette, IN, USA
Abstract :
We describe low-resolution 3D reconstructions of viral particles based on low-resolution (e.g., 20 Å) X-ray crystal diffraction data. The reconstructions are based on parameterized models because the number of data points is small, e.g., 3×102. Reconstruction is then equivalent to parameter estimation which we perform via nonlinear least squares. The focus is on the structure of the nucleic acid and we demonstrate that inclusion of models for the nucleic acid can reduce the R factor and that the resulting parameter values are in accord with simple physiochemical measurements
Keywords :
biological techniques; biology computing; crystal structure; image reconstruction; image resolution; least squares approximations; macromolecules; microorganisms; molecular biophysics; parameter estimation; R factor reduction; X-ray crystal diffraction data; low resolution 3D reconstructions; nonlinear least squares; nucleic acid; parameter estimation; parameterized models; physiochemical measurements; viral particles; viruses; Atomic measurements; Data engineering; Electrons; Fourier transforms; Image reconstruction; Least squares approximation; Nuclear measurements; Parameter estimation; Viruses (medical); X-ray diffraction;
Conference_Titel :
Image Processing, 1998. ICIP 98. Proceedings. 1998 International Conference on
Conference_Location :
Chicago, IL
Print_ISBN :
0-8186-8821-1
DOI :
10.1109/ICIP.1998.727215