DocumentCode
3319319
Title
Notice of Retraction
Prediction of ACE Inhibitor Tripeptides Activity Based on Amino Acid Descriptors(E) from Multiple Linear Regression Model
Author
Jiajian Yin
Author_Institution
Coll. of Life & Sci., Sichuan Agric. Univ., Yaan, China
fYear
2011
fDate
10-12 May 2011
Firstpage
1
Lastpage
4
Abstract
Notice of Retraction
After careful and considered review of the content of this paper by a duly constituted expert committee, this paper has been found to be in violation of IEEE´s Publication Principles.
We hereby retract the content of this paper. Reasonable effort should be made to remove all past references to this paper.
The presenting author of this paper has the option to appeal this decision by contacting TPII@ieee.org.
A novel amino acids quantitative descriptor E, which (E1~E5) was derived from the 5 principal components of 237 physical-chemical properties, has been introduced in bioactive peptides Quantitative Structure-Activity Relationship (QSAR) Study in the article. It has been proved that correlate good with hydrophobicity, size, preference for amino acids to occur in Of helices, composition and the net charge, respectively. They were then applied to construct characterization and QSAR analysis on 55 angiotensin-converting enzyme (ACE) inhibitor tripeptides by multiple linear regression (MLR). The leave-one-out cross validation values (Q2(Cv)) was 0.980, the multiple correlation coefficients (R2) was 0.991, the root mean square error (RMSE) for estimated error was 0.062 for ACE inhibitor tri-peptides by MLR. The results showed that, in comparison with the conventional descriptors, the new descriptor (E) is a useful structure characterization method for peptide QSAR analysis. The importance of each parameter or property at each position in peptides is estimated by the regression coefficient value of the MLR model. The establishment of such methods will be a very meaningful work to peptide bioactive investigation in peptide analogue drug design.
After careful and considered review of the content of this paper by a duly constituted expert committee, this paper has been found to be in violation of IEEE´s Publication Principles.
We hereby retract the content of this paper. Reasonable effort should be made to remove all past references to this paper.
The presenting author of this paper has the option to appeal this decision by contacting TPII@ieee.org.
A novel amino acids quantitative descriptor E, which (E1~E5) was derived from the 5 principal components of 237 physical-chemical properties, has been introduced in bioactive peptides Quantitative Structure-Activity Relationship (QSAR) Study in the article. It has been proved that correlate good with hydrophobicity, size, preference for amino acids to occur in Of helices, composition and the net charge, respectively. They were then applied to construct characterization and QSAR analysis on 55 angiotensin-converting enzyme (ACE) inhibitor tripeptides by multiple linear regression (MLR). The leave-one-out cross validation values (Q2(Cv)) was 0.980, the multiple correlation coefficients (R2) was 0.991, the root mean square error (RMSE) for estimated error was 0.062 for ACE inhibitor tri-peptides by MLR. The results showed that, in comparison with the conventional descriptors, the new descriptor (E) is a useful structure characterization method for peptide QSAR analysis. The importance of each parameter or property at each position in peptides is estimated by the regression coefficient value of the MLR model. The establishment of such methods will be a very meaningful work to peptide bioactive investigation in peptide analogue drug design.
Keywords
biochemistry; chemical analysis; chemical structure; enzymes; hydrophobicity; inhibitors; mean square error methods; molecular biophysics; regression analysis; ACE inhibitor tripeptides activity; QSAR analysis; amino acid descriptors; amino acids; angiotensin-converting enzyme; bioactive peptides quantitative structure-activity relationship analysis; chemical composition; hydrophobicity; multiple correlation coefficient; multiple linear regression model; peptide analogue drug design; physical-chemical properties; root mean square error; Amino acids; Biological system modeling; Inhibitors; Linear regression; Peptides; Predictive models;
fLanguage
English
Publisher
ieee
Conference_Titel
Bioinformatics and Biomedical Engineering, (iCBBE) 2011 5th International Conference on
Conference_Location
Wuhan
ISSN
2151-7614
Print_ISBN
978-1-4244-5088-6
Type
conf
DOI
10.1109/icbbe.2011.5780126
Filename
5780126
Link To Document