• DocumentCode
    3351198
  • Title

    Rate Distortion Theory in Cellular Signaling

  • Author

    Andrews, Burton W. ; Iglesias, Pablo A.

  • Author_Institution
    Johns Hopkins Univ., Baltimore
  • fYear
    2007
  • fDate
    14-16 March 2007
  • Firstpage
    172
  • Lastpage
    173
  • Abstract
    Summary form only given. Cells often use signal transduction networks to make decisions critical to proper cell functioning. However, the performance and efficiency of many cellular decision-making systems is relatively unclear. Here we use rate distortion theory as theoretical tool for studying performance-cost tradeoffs in cellular decision making. The rate distortion function provides a lower bound on the rate at which information must be transmitted through the cellular signal transduction network in order to achieve a given performance criterion. To study gradient sensing performance of D. discoideum cells, we developed a model of the cell´s directional response to a chemoattractant gradient that arises from a random direction. The distribution of the gradient angle represents a priori knowledge of the chemoattractant source location from the perspective of the cell. Using a distortion function closely related to the chemotactic index - a widely used measure of chemotactic performance - we computed the rate distortion function that minimizes the mutual information between the gradient angle and the directional response of the cell. We found that the input-output maps that optimally achieve the rate distortion function closely match published models that capture key characteristics of the signaling network in D. discoideum, implying that these cells have evolved to respond to chemoattractant sources in an efficient manner.
  • Keywords
    cellular biophysics; decision making; minimisation; rate distortion theory; cell directional response; cell gradient sensing performance; cellular decision-making systems; cellular signal transduction networks; chemoattractant gradient; chemoattractant source location; chemotactic index; minimization; performance-cost tradeoffs; rate distortion theory; Biology computing; Cells (biology); Cellular networks; Fungi; Genetic communication; Information theory; Polarization; Position measurement; Rate distortion theory; Rate-distortion; cellular signaling; chemotaxis; decision-making; rate distortion; systems biology;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Information Sciences and Systems, 2007. CISS '07. 41st Annual Conference on
  • Conference_Location
    Baltimore, MD
  • Print_ISBN
    1-4244-1063-3
  • Electronic_ISBN
    1-4244-1037-1
  • Type

    conf

  • DOI
    10.1109/CISS.2007.4298294
  • Filename
    4298294