DocumentCode :
3399419
Title :
A memetic co-clustering algorithm for gene expression profiles and biological annotation
Author :
Speer, Nora ; Spieth, Christian ; Zell, Andreas
Author_Institution :
Centre for Bioinformatics Tubingen, Tubingen Univ., Germany
Volume :
2
fYear :
2004
fDate :
19-23 June 2004
Firstpage :
1631
Abstract :
With the invention of microarrays, researchers are capable of measuring thousands of gene expression levels in parallel at various time points of the biological process. To investigate general regulatory mechanisms, biologists cluster genes based on their expression patterns. In this paper, we propose a new memetic co-clustering algorithm for expression profiles, which incorporates a priori knowledge in the form of gene ontology information. Ontologies offer a mechanism to capture knowledge in a shareable form that is also processable by computers. The use of this additional annotation information promises to improve biological data analysis and simplifies the identification of processes that are relevant under the measured conditions.
Keywords :
biology computing; data analysis; data mining; evolutionary computation; genetics; ontologies (artificial intelligence); pattern clustering; annotation information; biological annotation; biological data analysis; biological process; expression patterns; gene clustering; gene expression levels; gene expression profiles; gene ontology information; general regulatory mechanisms; memetic coclustering algorithm; Bioinformatics; Biological processes; Biology computing; Clustering algorithms; DNA; Data analysis; Gene expression; Ontologies; Time measurement; Unsupervised learning;
fLanguage :
English
Publisher :
ieee
Conference_Titel :
Evolutionary Computation, 2004. CEC2004. Congress on
Print_ISBN :
0-7803-8515-2
Type :
conf
DOI :
10.1109/CEC.2004.1331091
Filename :
1331091
Link To Document :
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