DocumentCode
3400614
Title
Selection of the most useful subset of genes for gene expression-based classification
Author
Paul, Topon K. ; Iba, Hitoshi
Author_Institution
Graduate Sch. of Frontier Sci., Tokyo Univ., Chiba, Japan
Volume
2
fYear
2004
fDate
19-23 June 2004
Firstpage
2076
Abstract
Recently, there has been a growing interest in classification of patient samples based on gene expressions. Here the classification task is made more difficult by the noisy nature of the data, and by the overwhelming number of genes relative to the number of available training samples in the data set. Moreover, many of these genes are irrelevant for classification and have negative effect on the accuracy and on the required learning time for the classifier. We propose a new evolutionary computation method to select the most useful subset of genes for molecular classification. We apply this method to three benchmark data sets and present our unbiased experimental results.
Keywords
biology computing; evolutionary computation; genetics; molecular biophysics; pattern classification; data noisy nature; evolutionary computation; gene expression; gene subset; learning time; molecular classification; patient samples; DNA; Diseases; Evolutionary computation; Filters; Gene expression; Partitioning algorithms; Rough surfaces; Semiconductor device measurement; Sequences; Solids;
fLanguage
English
Publisher
ieee
Conference_Titel
Evolutionary Computation, 2004. CEC2004. Congress on
Print_ISBN
0-7803-8515-2
Type
conf
DOI
10.1109/CEC.2004.1331152
Filename
1331152
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