Title :
Unbiased τ-leap methods for stochastic simulation of biochemical systems
Author :
Xu, Zhouyi ; Cai, Xiaodong
Author_Institution :
ECE Dept., Univ. of Miami, Coral Gables, FL
fDate :
March 31 2008-April 4 2008
Abstract :
Stochastic simulation of biological systems has received much attention recently. A very promising stochastic simulation method is the tau-leap method, which can significantly accelerate simulation with controllable accuracy. However, all current -leap methods produce biased results, which can cause large simulation errors. In this paper, we analyze the expected number of reactions occurring during each leap. Relying on the analytical results, we develop an unbiased Poisson tau-leap method and an unbiased binomial tau-leap method. Simulations demonstrate that our new unbiased tau-leap method can significantly improve simulation accuracy without sacrificing simulation speed.
Keywords :
biochemistry; molecular biophysics; stochastic processes; Poisson method; binomial method; biochemical systems; current-leap methods; stochastic simulation; unbiased tau-leap methods; Acceleration; Biological system modeling; Biological systems; Chemical analysis; Computational modeling; Discrete event simulation; Random variables; Stochastic processes; Stochastic systems; Tin; Biological system modeling; Cell signalling pathway; Parameter estimation; Stochastic simulation;
Conference_Titel :
Acoustics, Speech and Signal Processing, 2008. ICASSP 2008. IEEE International Conference on
Conference_Location :
Las Vegas, NV
Print_ISBN :
978-1-4244-1483-3
Electronic_ISBN :
1520-6149
DOI :
10.1109/ICASSP.2008.4517695