Title :
SUPERCONTIGS: a contig scaffolding tool
Author_Institution :
Virginia Commonwealth Univ., Richmond, VA, USA
Abstract :
SUPERCONTIGS is a genome-finishing tool that orders, orients and groups contigs based on clone pair information and an alignment with a related genome. The program can be used in the genome finishing and gap closing process. SUPERCONTIGS is a Perl script that runs on Unix-like systems. It is available at http://www.vcu.edu/csbc/bccl/research-downloads.htm as a copy-left public domain program.
Keywords :
Perl; biology computing; genetics; molecular biophysics; Perl script; SUPERCONTIGS; Unix-like systems; clone pair information; contig scaffolding tool; copy-left public domain program; gap closing; genome-finishing tool; Assembly; Bioinformatics; Biological cells; Cloning; Cryptography; Filters; Genomics; Libraries; Sequences; Visualization;
Conference_Titel :
Computational Systems Bioinformatics Conference, 2004. CSB 2004. Proceedings. 2004 IEEE
Print_ISBN :
0-7695-2194-0
DOI :
10.1109/CSB.2004.1332563
