DocumentCode
3410962
Title
SUPERCONTIGS: a contig scaffolding tool
Author
Puiu, Daniela
Author_Institution
Virginia Commonwealth Univ., Richmond, VA, USA
fYear
2004
fDate
16-19 Aug. 2004
Firstpage
736
Lastpage
737
Abstract
SUPERCONTIGS is a genome-finishing tool that orders, orients and groups contigs based on clone pair information and an alignment with a related genome. The program can be used in the genome finishing and gap closing process. SUPERCONTIGS is a Perl script that runs on Unix-like systems. It is available at http://www.vcu.edu/csbc/bccl/research-downloads.htm as a copy-left public domain program.
Keywords
Perl; biology computing; genetics; molecular biophysics; Perl script; SUPERCONTIGS; Unix-like systems; clone pair information; contig scaffolding tool; copy-left public domain program; gap closing; genome-finishing tool; Assembly; Bioinformatics; Biological cells; Cloning; Cryptography; Filters; Genomics; Libraries; Sequences; Visualization;
fLanguage
English
Publisher
ieee
Conference_Titel
Computational Systems Bioinformatics Conference, 2004. CSB 2004. Proceedings. 2004 IEEE
Print_ISBN
0-7695-2194-0
Type
conf
DOI
10.1109/CSB.2004.1332563
Filename
1332563
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