Title :
On the integration of protein contact map predictions
Author :
Tradigo, Giuseppe
Author_Institution :
Dept. of Exp. & Clinical Med., Magna Graecia Univ. of Catanzaro, Catanzaro, Italy
Abstract :
Protein structure prediction is a key topic in computational structural proteomics. The hypothesis that protein biological functions are implied by their three-dimensional structure makes the protein tertiary structure prediction a relevant problem to be solved. Predicting the tertiary structure of a protein by using its residue sequence is called the protein folding problem. Recently, novel approaches to the solution of this problem have been found and many of them use contact maps as a guide during the prediction process. Contact map structures are bidimensional objects which represent some of the structural information of a protein. Many approaches and bioinformatics tools for contact map prediction have been presented during the past years, having different performances for different protein families. In this work we present a novel approach based on the integration of contact map predictions in order to improve the quality of the predicted contact map with a consensus-based algorithm.
Keywords :
bioinformatics; proteins; proteomics; sequences; bidimensional objects; bioinformatics tools; computational structural proteomics; consensus-based algorithm; protein biological functions; protein contact map prediction; protein folding problem; protein tertiary structure prediction; residue sequence; three-dimensional structure; Accuracy; Amino acids; Bioinformatics; Biology computing; Crystallography; Magnetic resonance; Proteins; Proteomics; Software tools; Spectroscopy;
Conference_Titel :
Computer-Based Medical Systems, 2009. CBMS 2009. 22nd IEEE International Symposium on
Conference_Location :
Albuquerque, NM
Print_ISBN :
978-1-4244-4879-1
Electronic_ISBN :
1063-7125
DOI :
10.1109/CBMS.2009.5255418