DocumentCode :
3438744
Title :
A novel biclustering with parallel genetic algorithm
Author :
Wei Shen ; Chengjun Xie ; Guixia Liu ; Chong Xing ; Mingqian Wang ; You Zhou
Author_Institution :
Coll. of Comput. Sci. & Technol., Jilin Univ., Changchun, China
fYear :
2011
fDate :
19-22 Aug. 2011
Firstpage :
900
Lastpage :
903
Abstract :
A novel biclustering algorithm is proposed in this paper, which can be used to cluster gene expression data. One of the contributions of this paper is a novel and effective residue function of the biclustering algorithm. Furthermore, the parallel genetic algorithm is firstly used to the algorithm of the biclustering for gene expression data. This method can avoid local convergence in the optimal algorithm mostly. The Yeast Saccharomyces cerevisiae cell cycle gene expression profiles from the Spellman´s data to bicluster are used to test the performance of new algorithm. And we compared our algorithm with traditional genetic algorithm in biclustering. The results reveal that novel proposed algorithms could discover the interesting patterns in the gene expression profiles.
Keywords :
biology computing; genetic algorithms; parallel algorithms; pattern clustering; Yeast Saccharomyces cerevisiae cell cycle gene expression profile; algorithm performance testing; biclustering algorithm; cluster gene expression data; parallel genetic algorithm; residue function; Algorithm design and analysis; Clustering algorithms; Gene expression; Genetic algorithms; Prediction algorithms; Software algorithms; biclustering; gene expression profiles; parallel genetic algorithm; residue function;
fLanguage :
English
Publisher :
ieee
Conference_Titel :
Human Health and Biomedical Engineering (HHBE), 2011 International Conference on
Conference_Location :
Jilin
Print_ISBN :
978-1-61284-723-8
Type :
conf
DOI :
10.1109/HHBE.2011.6028968
Filename :
6028968
Link To Document :
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