• DocumentCode
    3448772
  • Title

    Hybrid DE-SVM Approach for Feature Selection: Application to Gene Expression Datasets

  • Author

    Garcia-Nieto, Jose ; Alba, Enrique ; Apolloni, Javier

  • Author_Institution
    Dept. de Lenguajes y Cienc. de la Comput., Univ. of Malaga, Malaga, Spain
  • fYear
    2009
  • fDate
    10-12 Sept. 2009
  • Firstpage
    1
  • Lastpage
    6
  • Abstract
    The efficient selection of predictive and accurate gene subsets for cell-type classification is nowadays a crucial problem in Microarray data analysis. The application and combination of dedicated computational intelligence methods holds a great promise for tackling the feature selection and classification. In this work we present a Differential Evolution (DE) approach for the efficient automated gene subset selection. In this model, the selected subsets are evaluated by means of their classification rate using a Support Vector Machines (SVM) classifier. The proposed approach is tested on DLBCL Lymphoma and Colon Tumor gene expression datasets. Experiments lying in effectiveness and biological analyses of the results, in addition to comparisons with related methods in the literature, indicate that our DE-SVM model is highly reliable and competitive.
  • Keywords
    biology computing; computational complexity; data analysis; pattern classification; support vector machines; Microarray data analysis; cell-type classification; differential evolution; feature selection; gene expression datasets; support vector machines; Biological system modeling; Colon; Computational intelligence; Data analysis; Evolution (biology); Gene expression; Neoplasms; Support vector machine classification; Support vector machines; Testing;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Logistics and Industrial Informatics, 2009. LINDI 2009. 2nd International
  • Conference_Location
    Linz
  • Print_ISBN
    978-1-4244-3958-4
  • Electronic_ISBN
    978-1-4244-3958-4
  • Type

    conf

  • DOI
    10.1109/LINDI.2009.5258761
  • Filename
    5258761