DocumentCode :
3453602
Title :
Graph based unsupervised feature selection for microarray data
Author :
Swarnkar, T. ; MITRA, PINAKI
Author_Institution :
Dept. of Comput. Sci. & Eng., Indian Institue of Technol., Kharagpur, India
fYear :
2012
fDate :
4-7 Oct. 2012
Firstpage :
750
Lastpage :
751
Abstract :
Gene selection is an important step in microarray data analysis. In this paper we present an unsupervised feature selection technique for this purpose. The method constructs multiview graph based representation of samples using expression values gene sub clusters. Such individual views are further clustered using graph clustering techniques. We evaluate our technique using classification accuracies obtained from selecting representative genes from each such clusters.
Keywords :
biology computing; data analysis; graph theory; pattern classification; pattern clustering; classification accuracy; expression values gene sub clusters; gene selection; graph based unsupervised feature selection; graph clustering techniques; microarray data analysis; multiview graph based representation; representative gene selection; Accuracy; Bioinformatics; Clustering algorithms; Conferences; Gene expression; Principal component analysis; Sensitivity; GUFS; Gene Selection; Hierarchical Clustering; Microarray; PCA; RELIEF; Unsupervised learning; Wrapper method; k-means;
fLanguage :
English
Publisher :
ieee
Conference_Titel :
Bioinformatics and Biomedicine Workshops (BIBMW), 2012 IEEE International Conference on
Conference_Location :
Philadelphia, PA
Print_ISBN :
978-1-4673-2746-6
Electronic_ISBN :
978-1-4673-2744-2
Type :
conf
DOI :
10.1109/BIBMW.2012.6470231
Filename :
6470231
Link To Document :
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