• DocumentCode
    3455438
  • Title

    An Effective Multi-level Immune Algorithm for Graph Bipartitionin

  • Author

    Leng, Ming ; Sun, Lingyu ; Yu, Songnian

  • Author_Institution
    Dept. of Comput. Sci., Jinggangshan Univ., Ji´´an, China
  • fYear
    2009
  • fDate
    3-5 Aug. 2009
  • Firstpage
    543
  • Lastpage
    548
  • Abstract
    An important application of graph partitioning is data clustering using a graph model--- the pairwise similarities between all data objects form a weighted graph adjacency matrix that contains all necessary information for clustering. An effective multi-level algorithm based on AIS (artificial immune systems) for graph bipartitioning is proposed. During its coarsening phase, we adopt an improved matching approach based on the global information of the graph core to develop its guidance function. During its refinement phase, we exploit the hybrid immune refinement algorithm inspired in the CSA (clonal selection algorithm) and affinity maturation of the AIS. The algorithm is verified to be capable of finding the global approximate bipartitioning which incorporate early-exit FM (FM-EE) local improvement heuristic into CSA. The success of our algorithm relies on exploiting both the CSA and the concept of the graph core. It is implemented with American National Standards Institute (ANSI) C and compared to MeTiS that is a state-of-the-art partitioner in the literature. Our experimental evaluations show that it performs well and produces encouraging solutions on 18 graphs benchmarks.
  • Keywords
    artificial immune systems; data handling; graph theory; matrix algebra; pattern clustering; ANSI C; American National Standards Institute; MeTiS comparison; affinity maturation; approximate bipartitioning; artificial immune system; clonal selection algorithm; data clustering; data objects; early-exit FM local improvement heuristic; graph bipartitioning; graph core; graph model; guidance function; hybrid immune refinement algorithm; matching approach; multilevel immune algorithm; pairwise similarity; weighted graph adjacency matrix; Artificial immune systems; Biology computing; Clustering algorithms; Heuristic algorithms; Immune system; Iterative algorithms; Particle swarm optimization; Partitioning algorithms; Switches; Symmetric matrices; bipartitionin; graph; immune algorithm; multi-level;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Bioinformatics, Systems Biology and Intelligent Computing, 2009. IJCBS '09. International Joint Conference on
  • Conference_Location
    Shanghai
  • Print_ISBN
    978-0-7695-3739-9
  • Type

    conf

  • DOI
    10.1109/IJCBS.2009.12
  • Filename
    5260452