Title :
The Core and Pan-Genome of the Vibrionaceae
Author :
Lilburn, Timothy G. ; Cai, Hong ; Gu, Jianying
Author_Institution :
Dept. of Bacteriology, American Type Culture Collection, Manassas, VA, USA
Abstract :
Species of the family Vibrionaceae are ubiquitous in marine environments and the family contains numerous important pathogens of humans and marine species. In order to find the core, accessory and pan-proteome of this family, we deduced the complete set of orthologs for eleven strains from this family. The core proteome consists of 1,882 groups of orthologs, which is 28% of the 6,629 orthologous groups in this family. The composition of the proteomes are reflective of the differing evolutionary trajectories followed by different strains to similar phenotypes.
Keywords :
evolution (biological); genomics; microorganisms; proteins; proteomics; Vibrionaceae; comparative genomics; evolutionary trajectories; marine environment; orthologous protein; pan-proteome; pathogens; Bioinformatics; Biology computing; Capacitive sensors; Diseases; Genomics; Humans; Marine animals; Organisms; Pathogens; Systems biology; Vibrionaceae; comparative genomics; core proteome; orthologous proteins;
Conference_Titel :
Bioinformatics, Systems Biology and Intelligent Computing, 2009. IJCBS '09. International Joint Conference on
Conference_Location :
Shanghai
Print_ISBN :
978-0-7695-3739-9
DOI :
10.1109/IJCBS.2009.60
