DocumentCode :
3461685
Title :
Optimizing Big Data in Bioinformatics with Swarm Algorithms
Author :
Abdul-Rahman, Shuzlina ; Bakar, Afarulrazi Abu ; Mohamed-Hussein, Zeti-Azura
Author_Institution :
Center of Inf. Syst. Studies, Univ. Teknol. MARA, Shah Alam, Malaysia
fYear :
2013
fDate :
3-5 Dec. 2013
Firstpage :
1091
Lastpage :
1095
Abstract :
This paper describes the application of swarm algorithms on bioinformatics data namely protein sequences. The big data that exists in bioinformatics domains require an intelligent method that capable to increase the performance of classification as well as discovering the knowledge. The work optimizes the big features that exist in protein sequences using the two-tier hybrid model by applying the filter and wrapper method. The use of swarm algorithm namely particle swarm optimization has improved the classification accuracy as the features are optimized prior to classification. The study also compares the performance of swarm algorithms with the standard searching method.
Keywords :
Big Data; bioinformatics; data mining; particle swarm optimisation; pattern classification; proteins; Big Data optimization; bioinformatics data; bioinformatics domains; classification accuracy; classification performance; filter and wrapper method; intelligent method; knowledge discovery; particle swarm optimization; protein sequences; two-tier hybrid model; Accuracy; Bioinformatics; Feature extraction; Filtering algorithms; Particle swarm optimization; Proteins; big data; bioinformatics; particle swarm optimisation; protein sequences; swarm intelligent;
fLanguage :
English
Publisher :
ieee
Conference_Titel :
Computational Science and Engineering (CSE), 2013 IEEE 16th International Conference on
Conference_Location :
Sydney, NSW
Type :
conf
DOI :
10.1109/CSE.2013.158
Filename :
6755339
Link To Document :
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