Title :
Design and optimization of a digital microfluidic biochip for protein crystallization
Author :
Xu, Tao ; Chakrabarty, Krishnendu ; Pamula, Vamsee K.
Author_Institution :
Dept. of Electr. & Comput. Eng., Duke Univ., Durham, NC
Abstract :
Proteins crystallization is a commonly used technique for protein analysis and subsequent drug design. It predicts the three-dimensional arrangement of the constituent amino acids, which in turn indicates the specific biological function of a protein. Protein crystallization experiments are typically carried out manually on multi-well plates in the laboratory. These experiments are slow, expensive, and error-prone. We present the design of a multi-well plate microfluidic biochip for protein crystallization; this biochip can transfer protein samples, prepare candidate solutions, and carry out crystallization automatically. To reduce the manufacturing cost of such devices, we present an efficient algorithm to generate a pin-assignment plan for the proposed design. The resulting biochip enables control of a large number of on-chip electrodes using only a small number of pins. Based on the pin-constrained chip design, we present an efficient shuttle-passenger-like droplet manipulation method to achieve high-throughput and defect-tolerant well loading.
Keywords :
bioMEMS; biochemistry; crystallisation; digital integrated circuits; microfluidics; plates (structures); proteomics; amino acids; crystallization; digital microfluidic biochip; multi-well plates; on-chip electrodes; protein; shuttle-passenger-like droplet manipulation; three-dimensional arrangement; Algorithm design and analysis; Amino acids; Costs; Crystallization; Design optimization; Drugs; Laboratories; Manufacturing; Microfluidics; Proteins;
Conference_Titel :
Computer-Aided Design, 2008. ICCAD 2008. IEEE/ACM International Conference on
Conference_Location :
San Jose, CA
Print_ISBN :
978-1-4244-2819-9
Electronic_ISBN :
1092-3152
DOI :
10.1109/ICCAD.2008.4681589