Title :
An identification of secondary structure conserved elements in mammalian syntenic regions
Author :
Mituyama, Toutai
Author_Institution :
Comput. Biol. Res. Center, AIST, Tokyo, Japan
Abstract :
3,361 putative RNA secondary structure conserved regions were identified from mammalian syntenies by using leading-edge RNA sequence data analysis tools. The identified candidates are found to be concentrated in transcription factor binding sites of various genes, which infer secondary structure conserved elements play certain roles for transcription regulation.
Keywords :
bioinformatics; biological techniques; genetics; macromolecules; molecular biophysics; molecular configurations; organic compounds; RNA secondary structure conserved regions; RNA sequence data analysis tools; mammalian syntenic regions; mammalian syntenies; secondary structure conserved element identification; transcription factor binding sites; transcription regulation; Bioinformatics; Encoding; Genomics; Humans; Mice; RNA; Thin film transistors; bioinformatics; ncRNA; secondary structure; synteny; transcription factor binding site;
Conference_Titel :
Systems Biology (ISB), 2011 IEEE International Conference on
Conference_Location :
Zhuhai
Print_ISBN :
978-1-4577-1661-4
Electronic_ISBN :
978-1-4577-1665-2
DOI :
10.1109/ISB.2011.6033182
