• DocumentCode
    3538531
  • Title

    Computing mRNA and protein statistical moments for a renewal model of stochastic gene-expression

  • Author

    Antunes, D. ; Singh, Ashutosh

  • Author_Institution
    Dept. of Mech. Eng., Eindhoven Univ. of Technol., Eindhoven, Netherlands
  • fYear
    2013
  • fDate
    10-13 Dec. 2013
  • Firstpage
    7199
  • Lastpage
    7204
  • Abstract
    The level of a given mRNA or protein exhibits significant variations from cell-to-cell across a homogenous population of living cells. Much work has focused on understanding the different sources of noise in the gene-expression process that drive this stochastic variability in gene-expression. Recent experiments tracking growth and division of individual cells reveal that cell division times have considerable intercellular heterogeneity. Here we investigate how randomness in the cell division times can create variability in population counts. We consider a model where mRNA/protein levels evolve according to a linear differential equation with cell divisions times spaced by independent and identically distributed random intervals. Whenever the cell divides the population of mRNA and protein is halved. Considering gamma distributed cell division intervals, we provide a method for computing the mean and variance of mRNA and protein levels and provide exact analytical formulas for the asymptotic values of these statistical moments. Computation of the statistical moments for physiologically relevant parameter values shows that randomness in the cell division process can be a major factor in driving difference in protein levels across a population of cells.
  • Keywords
    RNA; biology computing; cellular biophysics; gamma distribution; linear differential equations; proteins; statistical analysis; stochastic processes; cell division process; cell divisions times; distributed random intervals; gamma distributed cell division intervals; individual cell division; individual cell growth tracking; intercellular heterogeneity; linear differential equation; mRNA computation; mRNA-protein levels; protein statistical moments; stochastic gene-expression renewal model; stochastic variability; Differential equations; Mathematical model; Protein engineering; Proteins; Sociology; Statistics; Stochastic processes;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Decision and Control (CDC), 2013 IEEE 52nd Annual Conference on
  • Conference_Location
    Firenze
  • ISSN
    0743-1546
  • Print_ISBN
    978-1-4673-5714-2
  • Type

    conf

  • DOI
    10.1109/CDC.2013.6761031
  • Filename
    6761031