Recognizing Short Tandem Repeat Regions in Genomic Sequences Using Wavelet

Author

Padole, Mamta C.

Author_Institution

Dept. of Comput. Sci. & Eng., Maharaja Sayajirao Univ. of Baroda, Kalabhavan, India

fYear

2014

Firstpage

288

Lastpage

294

Abstract

Short Tandem Repeats (STRs) in DNA sequences are associated with regulatory mechanisms. Existing tools for recognizing STRs, involve computational intensive string processing methods expecting parameters like pattern, pattern size or reference. This paper proposes ab initio, signal processing approach involving Wavelet Transformations, for detecting perfect, imperfect and interrupted STR regions.

Keywords

DNA; ab initio calculations; genomics; medical signal detection; wavelet transforms; DNA sequences; ab initio; computational intensive string processing methods; genomic sequences; imperfect STR regions detection; interrupted STR regions detection; pattern size; regulatory mechanisms; short tandem repeat regions recognition; signal processing approach; wavelet transformations; DNA; Discrete wavelet transforms; Genomics; Market research; Signal processing; Haar Wavelets; Microsatellites; Pattern Recognition; Short Tandem Repeats; Signal Processing; Wavelet; Wavelet Transforms;

fLanguage

English

Publisher

ieee

Conference_Titel

Mathematics and Computers in Sciences and in Industry (MCSI), 2014 International Conference on

Print_ISBN

978-1-4799-4744-7

Type

conf

DOI

10.1109/MCSI.2014.50

Filename

7046199

Link To Document

https://search.isc.ac/dl/search/defaultta.aspx?DTC=49&DC=3564825