DocumentCode :
3610823
Title :
A Hybrid Semi-Digital Transimpedance Amplifier With Noise Cancellation Technique for Nanopore-Based DNA Sequencing
Author :
Chung-Lun Hsu ; Haowei Jiang ; Venkatesh, A.G. ; Hall, Drew A.
Author_Institution :
Dept. of Electr. & Comput. Eng., Univ. of California, San Diego, La Jolla, CA, USA
Volume :
9
Issue :
5
fYear :
2015
Firstpage :
652
Lastpage :
661
Abstract :
Over the past two decades, nanopores have been a promising technology for next generation deoxyribonucleic acid (DNA) sequencing. Here, we present a hybrid semi-digital transimpedance amplifier (HSD-TIA) to sense the minute current signatures introduced by single-stranded DNA (ssDNA) translocating through a nanopore, while discharging the baseline current using a semi-digital feedback loop. The amplifier achieves fast settling by adaptively tuning a DC compensation current when a step input is detected. A noise cancellation technique reduces the total input-referred current noise caused by the parasitic input capacitance. Measurement results show the performance of the amplifier with 31.6 M Ω mid-band gain, 950 kHz bandwidth, and 8.5 fA/ √Hz input-referred current noise, a 2× noise reduction due to the noise cancellation technique. The settling response is demonstrated by observing the insertion of a protein nanopore in a lipid bilayer. Using the nanopore, the HSD-TIA was able to measure ssDNA translocation events.
Keywords :
DNA; biological techniques; capacitance; molecular biophysics; nanobiotechnology; nanostructured materials; operational amplifiers; proteins; DC compensation current; DNA translocation events; amplifier performance; bandwidth 950 kHz; baseline current; hybrid semidigital transimpedance amplifier; input-referred current noise; lipid bilayer; nanopore-based DNA sequencing; nanopores; next generation deoxyribonucleic acid sequencing; noise cancellation technique; noise reduction; parasitic input capacitance; protein nanopore; semidigital feedback loop; single-stranded DNA translocating; Bandwidth; Capacitance; DNA; Feedback loop; Nanobioscience; Noise cancellation; Sequential analysis; DNA sequencing; nanopore; noise cancellation technique; semi-digital feedback loop; transimpedance amplifier;
fLanguage :
English
Journal_Title :
Biomedical Circuits and Systems, IEEE Transactions on
Publisher :
ieee
ISSN :
1932-4545
Type :
jour
DOI :
10.1109/TBCAS.2015.2496232
Filename :
7331671
Link To Document :
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