• DocumentCode
    3610823
  • Title

    A Hybrid Semi-Digital Transimpedance Amplifier With Noise Cancellation Technique for Nanopore-Based DNA Sequencing

  • Author

    Chung-Lun Hsu ; Haowei Jiang ; Venkatesh, A.G. ; Hall, Drew A.

  • Author_Institution
    Dept. of Electr. & Comput. Eng., Univ. of California, San Diego, La Jolla, CA, USA
  • Volume
    9
  • Issue
    5
  • fYear
    2015
  • Firstpage
    652
  • Lastpage
    661
  • Abstract
    Over the past two decades, nanopores have been a promising technology for next generation deoxyribonucleic acid (DNA) sequencing. Here, we present a hybrid semi-digital transimpedance amplifier (HSD-TIA) to sense the minute current signatures introduced by single-stranded DNA (ssDNA) translocating through a nanopore, while discharging the baseline current using a semi-digital feedback loop. The amplifier achieves fast settling by adaptively tuning a DC compensation current when a step input is detected. A noise cancellation technique reduces the total input-referred current noise caused by the parasitic input capacitance. Measurement results show the performance of the amplifier with 31.6 M Ω mid-band gain, 950 kHz bandwidth, and 8.5 fA/ √Hz input-referred current noise, a 2× noise reduction due to the noise cancellation technique. The settling response is demonstrated by observing the insertion of a protein nanopore in a lipid bilayer. Using the nanopore, the HSD-TIA was able to measure ssDNA translocation events.
  • Keywords
    DNA; biological techniques; capacitance; molecular biophysics; nanobiotechnology; nanostructured materials; operational amplifiers; proteins; DC compensation current; DNA translocation events; amplifier performance; bandwidth 950 kHz; baseline current; hybrid semidigital transimpedance amplifier; input-referred current noise; lipid bilayer; nanopore-based DNA sequencing; nanopores; next generation deoxyribonucleic acid sequencing; noise cancellation technique; noise reduction; parasitic input capacitance; protein nanopore; semidigital feedback loop; single-stranded DNA translocating; Bandwidth; Capacitance; DNA; Feedback loop; Nanobioscience; Noise cancellation; Sequential analysis; DNA sequencing; nanopore; noise cancellation technique; semi-digital feedback loop; transimpedance amplifier;
  • fLanguage
    English
  • Journal_Title
    Biomedical Circuits and Systems, IEEE Transactions on
  • Publisher
    ieee
  • ISSN
    1932-4545
  • Type

    jour

  • DOI
    10.1109/TBCAS.2015.2496232
  • Filename
    7331671