• DocumentCode
    3743459
  • Title

    Identifying biochemical reaction networks from heterogeneous datasets

  • Author

    Wei Pan;Ye Yuan;Lennart Ljung;Jorge Gonçalves;Guy-Bart Stan

  • Author_Institution
    Centre for Synthetic Biology and Innovation and the Department of Bioengineering, Imperial College London, United Kingdom
  • fYear
    2015
  • Firstpage
    2525
  • Lastpage
    2530
  • Abstract
    In this paper, we propose a new method to identify biochemical reaction networks (i.e. both reactions and kinetic parameters) from heterogeneous datasets. Such datasets can contain (a) data from several replicates of an experiment performed on a biological system; (b) data measured from a biochemical network subjected to different experimental conditions, for example, changes/perturbations in biological inductions, temperature, gene knock-out, gene over-expression, etc. Simultaneous integration of various datasets to perform system identification has the potential to avoid non-identifiability issues typically arising when only single datasets are used.
  • Keywords
    "Mathematical model","Covariance matrices","Synthetic biology","Silicon","Temperature measurement","Biological system modeling"
  • Publisher
    ieee
  • Conference_Titel
    Decision and Control (CDC), 2015 IEEE 54th Annual Conference on
  • Type

    conf

  • DOI
    10.1109/CDC.2015.7402596
  • Filename
    7402596