Title :
Development of a novel Markov chain model for oxidative-dependent CaMKII? activation
Author :
Shanzhuo Zhang;Qince Li;Lufang Zhou;Kuanquan Wang;Henggui Zhang
Author_Institution :
Harbin Institute of Technology, China
Abstract :
Dysfunction in the Calcium (Ca2+)-calmodulin (CaM) dependent kinase II (CaMKII) signalling can lead to several pathologies, such as heart failure and arrhythmia. Especially, the role of CaMKII signalling in oxidative stress-induced arrhythmias remains unclear. In this study, we aimed to develop a new Markov chain model of CaMKII δ-isoform (CaMKIId) that involves both of the autophosphorylation and oxidation pathways to better simulate CaMKII signalling under oxidative stress in cardiomyocytes. Based on the four-state model developed by Chiba et al., we implemented two oxidized states including a Ca2+/CaM-bound state and a Ca2+/CaM-dissociated state, representing the new pathway of oxidation-dependent activation. Using the model, we reproduced the CaM affinity to CaMKIIδ, the dependence of autophosphorylation on CaM. The frequency-dependent activation of CaMKII was simulated for both CaMKII α- and δ-isoforms. For the oxidation pathway, our simulation suggested that H2O2 increased the kinase activity in a dose-dependent manner, which also fitted to experimental data. Finally this model was incorporated in a human atrial cell model to simulate the effects of CaMKII activation on cellular action potentials.
Keywords :
"Oxidation","Calcium","Data models","Proteins","Markov processes","Computational modeling","Simulation"
Conference_Titel :
Computing in Cardiology Conference (CinC), 2015
Print_ISBN :
978-1-5090-0685-4
Electronic_ISBN :
2325-887X
DOI :
10.1109/CIC.2015.7411052