DocumentCode :
423941
Title :
A feature_core and SVM-based algorithm for identification of bioprocess-specific genome features
Author :
Wang, Hongqiang ; Huang, Deshuang ; Zhang, Guangzheng ; Zhao, Xingming
Volume :
3
fYear :
2004
fDate :
25-29 July 2004
Firstpage :
1675
Abstract :
This work presents a SVM and feature_core-based algorithm for identification of key genome features. The significant difficulty in selecting key features from a high dimensional space of features is the curse of dimensions in searching. For this reason, a feature_core-based search strategy is proposed in this algorithm. The strategy integrates the forward selection and backward elimination techniques. In this algorithm all key genome features are formed through the agglomeration and expansion of the feature core based on potential information about relevance in a SVM classifier. The application given proves that the algorithm is faster and more efficient than other methods such as clustering, and the single SVM-based method.
Keywords :
biochemistry; feature extraction; genetics; pattern classification; search problems; support vector machines; SVM classifier based algorithm; agglomeration; backward elimination technique; bioprocess specific genome features; feature core based algorithm; feature core based search strategy; forward selection technique; Bioinformatics; Biological information theory; Clustering algorithms; Genomics; Pathogens; Proteins; Sequences; Space technology; Support vector machine classification; Support vector machines;
fLanguage :
English
Publisher :
ieee
Conference_Titel :
Neural Networks, 2004. Proceedings. 2004 IEEE International Joint Conference on
ISSN :
1098-7576
Print_ISBN :
0-7803-8359-1
Type :
conf
DOI :
10.1109/IJCNN.2004.1380851
Filename :
1380851
Link To Document :
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