DocumentCode :
429287
Title :
Classification of protein crystallization imagery
Author :
Zhu, Xiaoqing ; Sun, Shaohua ; Bern, Marshall
Author_Institution :
Dept. of Electr. Eng., Stanford Univ., CA, USA
Volume :
1
fYear :
2004
fDate :
1-5 Sept. 2004
Firstpage :
1628
Lastpage :
1631
Abstract :
We investigate automatic classification of protein crystallization imagery, and evaluate the performance of several modern mathematical tools when applied to the problem. For feature extraction, we try a combination of geometric and texture features; for classification algorithms, the support vector machine (SVM) is compared with an automatic decision-tree classifier. Experimental results from 520 images are presented for the binary classification problem: separating successful trials from failed attempts. The best false positive and false negative rates are at 14.6% and 9.6% respectively, achieved by feeding both sets of features to the decision-tree classifier with boosting.
Keywords :
biology computing; crystallisation; decision trees; feature extraction; image classification; image processing; molecular biophysics; proteins; support vector machines; automatic decision-tree classifier; binary classification; feature extraction; geometric features; image classification; protein crystallization imagery; support vector machine; texture features; Chemicals; Classification algorithms; Crystallization; Crystals; Feature extraction; Image edge detection; Protein engineering; Support vector machine classification; Support vector machines; X-ray diffraction;
fLanguage :
English
Publisher :
ieee
Conference_Titel :
Engineering in Medicine and Biology Society, 2004. IEMBS '04. 26th Annual International Conference of the IEEE
Conference_Location :
San Francisco, CA
Print_ISBN :
0-7803-8439-3
Type :
conf
DOI :
10.1109/IEMBS.2004.1403493
Filename :
1403493
Link To Document :
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