Title :
SLAP: design software for optimization of fluorescence analysis systems
Author :
Banani, N. ; Lee, L.A. ; Holl, M.R. ; Marquardt, B. ; Troll, M. ; Wilson, D.M.
Author_Institution :
Dept. of Electr. Eng., Washington Univ., Seattle, WA, USA
Abstract :
Initial results of a comprehensive design software that optimizes parameters for fluorescence analysis of a user-defined fluorophore are presented. SLAP (spectral LED aggregation program) automatically selects configurations of LEDs that, in a fluorescence analysis system, maximize the emission signal (useful output) as a function of the excitation signal (interference), optics, photodetection modality, and sample characteristics. Initial results draw on an extensive database of blue, blue-green, green and purple LEDs characterized across a range of nominal and overdrive operating conditions. Overdrive conditions enable spectral shifts of the LED excitation bands to enhance the overall flexibility of SLAP optimization. Representative results show a 70.1% improvement in collected signal for GFPuv fluorophores when compared to conventional LED-based fluorescence operated under nominal operating conditions.
Keywords :
biological techniques; biology computing; fluorescence; fluorescence spectroscopy; light emitting diodes; molecular biophysics; optimisation; spectral line shift; GFPuv fluorophores; LED excitation bands; SLAP optimization; design software; emission signal; excitation signal; fluorescence analysis systems; photodetection modality; spectral LED aggregation program; spectral shifts; user-defined fluorophore; Design optimization; Fluorescence; Light emitting diodes; Optical attenuators; Optical filters; Optical losses; Optical scattering; Signal processing; Software design; Stimulated emission; Emission; GFPuv; LED array; excitation; fluorescence spectroscopy; fluorophore; light emitting diode; waveguide;
Conference_Titel :
Engineering in Medicine and Biology Society, 2004. IEMBS '04. 26th Annual International Conference of the IEEE
Conference_Location :
San Francisco, CA
Print_ISBN :
0-7803-8439-3
DOI :
10.1109/IEMBS.2004.1403613