Title :
Hybrid Automata as a Unifying Framework for Modeling Excitable Cells
Author :
Entcheva, P.Ye.E. ; Smolka, Scott A. ; True, M.R. ; Grosu, Radu
Author_Institution :
Comput. Sci. Dept., Stony Brook Univ., NY
fDate :
Aug. 30 2006-Sept. 3 2006
Abstract :
We propose hybrid automata (HA) as a unifying framework for computational models of excitable cells. HA, which combine discrete transition graphs with continuous dynamics, can be naturally used to obtain a piecewise, possibly linear, approximation of a nonlinear excitable-cell model. We first show how HA can be used to efficiently capture the action-potential morphology-as well as reproduce typical excitable-cell characteristics such as refractoriness and restitution-of the dynamic Luo-Rudy model of a guinea-pig ventricular myocyte. We then recast two well-known computational models, Biktashev´s and Fenton-Karma, as HA without any loss of expressiveness. Given that HA possess an intuitive graphical representation and are supported by a rich mathematical theory and numerous analysis tools, we argue that they are well positioned as a computational model for biological processes
Keywords :
automata theory; bioelectric potentials; biomembrane transport; cardiology; graph theory; medical computing; muscle; physiological models; piecewise linear techniques; Luo-Rudy dynamic model; action-potential morphology; biological processes; computational cell model; discrete transition graphs; excitable cell modeling; excitable-cell characteristics; guinea-pig ventricular myocyte; hybrid automata; intuitive graphical representation; piecewise linear approximation; Automata; Biological system modeling; Biology computing; Computational modeling; Switches; Temperature; Thermal variables control; Thermostats; USA Councils; Vehicle dynamics;
Conference_Titel :
Engineering in Medicine and Biology Society, 2006. EMBS '06. 28th Annual International Conference of the IEEE
Conference_Location :
New York, NY
Print_ISBN :
1-4244-0032-5
Electronic_ISBN :
1557-170X
DOI :
10.1109/IEMBS.2006.259294