Title :
DNA Sequences Classification Based on Immune Evolution Network
Author :
Wang, Lianhong ; Zhang, Jing ; Huang, Xiaofeng ; Gong, Gufeng
Author_Institution :
Coll. of Electr. & Inf. Eng., Hunan Univ., Changsha
Abstract :
Classification is a major task in the gene sequence analysis. Based on the general principle of artificial immune system, this paper first constructed a classifier which inducted antibody-antigen identification, immune colonel reproduction, hypermutation, affinity mature and the network suppression, by simulating how the antigens stimulate the immune network and how the immune network responds. Then, a "leave-one-out" method was adopted to test the classifier\´s performance, applying 1-20th DNA sequences of Art-model-data with class attribute. Its accuracy was up to 90%. At last, a well-pleasing result was got on the prediction of 21-40th DNA sequences of Art-model-data.
Keywords :
DNA; artificial immune systems; artificial intelligence; biology computing; genetic algorithms; pattern classification; DNA sequence classification; affinity mature; antibody-antigen identification; artificial immune system; hypermutation; immune colonel reproduction; immune evolution network; leave-one-out method; Artificial immune systems; Bioinformatics; DNA; Evolution (biology); Genomics; Immune system; Organisms; Pathogens; Sequences; Testing; Classification; DNA Sequences; Immune Evolution Network;
Conference_Titel :
Fuzzy Systems and Knowledge Discovery, 2008. FSKD '08. Fifth International Conference on
Conference_Location :
Shandong
Print_ISBN :
978-0-7695-3305-6
DOI :
10.1109/FSKD.2008.126