Title :
Table Based Parsing for RNA
Author :
Al-Mulhem, Muhammed S.
Author_Institution :
Inf. & Comput. Sci. Dept., King Fahd Univ. of Pet. & Miner., Dhahran, Saudi Arabia
fDate :
March 31 2009-April 2 2009
Abstract :
Formal grammars have been used extensively in the analysis and design of programming languages and compilers. This paper gives a brief introduction to the application of stochastic context free grammars (SCFGs) to model RNA. Then it briefly presents the parsing algorithm for RNA. Next it introduces the bottom-up LR parsing algorithm. Finally it proposes a table-based parsing algorithm for RNA. The proposed algorithm is an extension of the LR parsing algorithm.
Keywords :
biology computing; context-free grammars; macromolecules; molecular biophysics; program compilers; programming languages; stochastic processes; RNA; bottom-up LR parsing algorithm; compiler; formal grammar; programming language; stochastic context free grammar; table-based parsing algorithm; Computer languages; Computer science; Context modeling; Design engineering; Information analysis; Minerals; Petroleum; Production; RNA; Stochastic processes;
Conference_Titel :
Computer Science and Information Engineering, 2009 WRI World Congress on
Conference_Location :
Los Angeles, CA
Print_ISBN :
978-0-7695-3507-4
DOI :
10.1109/CSIE.2009.941
