Title :
A Two-Stage Hybrid Approach for Feature Selection in Microarray Analysis
Author :
Lee, Chung-Hong ; Yang, Hsin-Chang ; Wu, Chih-Hong ; Lan, Yi-Chia
Author_Institution :
Dept of Electr. Eng., Nat. Kaohsiung Univ. of Appl. Sci., Kaohsiung, Taiwan
Abstract :
In this paper, we describe a two-stage hybrid approach to select gene features and produce dominant patterns for evaluating the pathological probability. To discover suitable genes as experiment samples for distinguishing the status of gene regulation, we utilized receiver operating characteristic (ROC) method to eliminate non-significant genes of unapparent variation between normal tissues and tumors. Subsequently, these selected genes are clustered through an unsupervised learning algorithm to reduce overall training samples under the same condition. In addition, the resulting samples have been verified by means of experimenting with the SVM and KNN methods. The experimental results show that our approach has potentials to effectively reduce samples for microarray analysis.
Keywords :
bioinformatics; cancer; data mining; feature extraction; genetics; medical computing; pattern clustering; probability; support vector machines; tumours; unsupervised learning; KNN; SVM; data mining; gene feature selection; gene regulation; microarray analysis; normal tissue; pathological probability; pattern clustering; receiver operating characteristic method; tumor; two-stage hybrid approach; unapparent variation; unsupervised learning algorithm; Cancer; Clustering algorithms; Gene expression; Machine learning; Neoplasms; Pathology; Pattern analysis; Support vector machine classification; Support vector machines; Unsupervised learning; Receiver operating characteristic; data mining; feature selection; machine learning; microarray;
Conference_Titel :
Hybrid Intelligent Systems, 2009. HIS '09. Ninth International Conference on
Conference_Location :
Shenyang
Print_ISBN :
978-0-7695-3745-0
DOI :
10.1109/HIS.2009.45