Title :
An Efficiency and Fast Algorithm Based on Gene Expressing Data Biclustering
Author :
Liu Wei ; Qu, Bo ; Yang, Zhong-Xue ; Chen, Ling
Author_Institution :
Sch. of Inf. Technol., Nanjing Xiaozhuang Univ., Nanjing, China
Abstract :
Biclustering the gene expressing data is an important task in bioinformatics. A parallel biclustering algorithm for gene expressing data is presented. The algorithm starts from the data sets containing pair of rows and columns of the data matrix, and gets the biclusters by gradually adding columns and rows on the data sets. A pruning technique is also proposed to reduce computing time. Experimental results show that our algorithm has superiority to other similar algorithms in terms of processing speed and quality of clustering.
Keywords :
bioinformatics; cellular biophysics; genetics; parallel algorithms; bioinformatics; fast algorithm; gene expressing data biclustering; parallel biclustering algorithm; pruning technique; Bioinformatics; Clustering algorithms; Gene expression; Information science; Information technology; Iterative methods; Laboratories; Software algorithms; Software engineering; Space technology; Biclustering; Gene expression data;
Conference_Titel :
Software Engineering, 2009. WCSE '09. WRI World Congress on
Conference_Location :
Xiamen
Print_ISBN :
978-0-7695-3570-8
DOI :
10.1109/WCSE.2009.29