DocumentCode :
526416
Title :
Spot segmentation and verification based on improve marker controlled watershed transform
Author :
Sun, Cheng-li ; Wang, Xi-min
Author_Institution :
Sch. of Inf. Eng., Hangkong Univ., Nanchang, China
Volume :
8
fYear :
2010
fDate :
9-11 July 2010
Firstpage :
63
Lastpage :
66
Abstract :
Two-dimensional gel electrophoresis (2D-GE) is the powerful technique used by biochemists to resolve and visualize protein samples. The 2D-GE images depict protein signals as spots of various intensities and sizes. Currently, the most popular technique for spot detection in 2D-GE image is the watershed transform (WST) due to its robustness. However presence of noise in 2D-GE images forces WST to oversegment them. In this paper, we present a two-stage protein spot detection approach, which is achieved by improve marker controlled watershed transform (MCWST) followed by spot verification. Experiments results show that the proposed method is robust in noised image and results in low spurious spot detection rate.
Keywords :
electrophoresis; formal verification; image segmentation; proteins; proteomics; 2D gel electrophoresis; 2D-GE images; WST; image segmentation; marker control watershed transform; noised image; protein signals; protein spot detection; spot verification; Image segmentation; Proteins; Robustness; image segmentation; spot detection; spot verification; watershed transform;
fLanguage :
English
Publisher :
ieee
Conference_Titel :
Computer Science and Information Technology (ICCSIT), 2010 3rd IEEE International Conference on
Conference_Location :
Chengdu
Print_ISBN :
978-1-4244-5537-9
Type :
conf
DOI :
10.1109/ICCSIT.2010.5563982
Filename :
5563982
Link To Document :
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