• DocumentCode
    526416
  • Title

    Spot segmentation and verification based on improve marker controlled watershed transform

  • Author

    Sun, Cheng-li ; Wang, Xi-min

  • Author_Institution
    Sch. of Inf. Eng., Hangkong Univ., Nanchang, China
  • Volume
    8
  • fYear
    2010
  • fDate
    9-11 July 2010
  • Firstpage
    63
  • Lastpage
    66
  • Abstract
    Two-dimensional gel electrophoresis (2D-GE) is the powerful technique used by biochemists to resolve and visualize protein samples. The 2D-GE images depict protein signals as spots of various intensities and sizes. Currently, the most popular technique for spot detection in 2D-GE image is the watershed transform (WST) due to its robustness. However presence of noise in 2D-GE images forces WST to oversegment them. In this paper, we present a two-stage protein spot detection approach, which is achieved by improve marker controlled watershed transform (MCWST) followed by spot verification. Experiments results show that the proposed method is robust in noised image and results in low spurious spot detection rate.
  • Keywords
    electrophoresis; formal verification; image segmentation; proteins; proteomics; 2D gel electrophoresis; 2D-GE images; WST; image segmentation; marker control watershed transform; noised image; protein signals; protein spot detection; spot verification; Image segmentation; Proteins; Robustness; image segmentation; spot detection; spot verification; watershed transform;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Computer Science and Information Technology (ICCSIT), 2010 3rd IEEE International Conference on
  • Conference_Location
    Chengdu
  • Print_ISBN
    978-1-4244-5537-9
  • Type

    conf

  • DOI
    10.1109/ICCSIT.2010.5563982
  • Filename
    5563982