Title :
Restoring of single ion-channel current based on wavelet transform
Author :
Huang, Zhongchao ; Tan, Qiulin ; Gu, Liqun
Author_Institution :
Dept. of Biomed. Eng., Central South Univ., Changsha, China
Abstract :
Patch-clamp recordings or artificial planar bilayer recordings provide an effective mean for detailed kinetics studies at singular molecular level. The restoration or idealization into continuous dwell-time sequences of noisy single channel recordings is the essential fundamental of successive analysis. In term of the characteristics of step changes in data recording when switching between open and close states, we present a jump-edge detection method using specific wavelet based on its ability of singularity detection for determining the borders of open or closed events. Meanwhile, two important problems are in detail discussed including the threshold selection criterion and identification of min/max extreme point pairs. Applications to simulation and experiment data elucidate the performances and virtues of the proposed method.
Keywords :
bioelectric phenomena; biology computing; biomembrane transport; molecular biophysics; signal processing; wavelet transforms; continuous dwell-time sequences; jump-edge detection method; min-max extreme point pairs; noisy single channel recordings; single ion-channel current; singular molecular level; threshold selection criterion; wavelet transform; Data models; Filter bank; Fitting; Hidden Markov models; Kinetic theory; Wavelet transforms; extreme point pairs; idealization; single channel recording; singularity detection; wavelet transform;
Conference_Titel :
Image and Signal Processing (CISP), 2010 3rd International Congress on
Conference_Location :
Yantai
Print_ISBN :
978-1-4244-6513-2
DOI :
10.1109/CISP.2010.5647800