• DocumentCode
    557572
  • Title

    Predicting intrinsically disordered proteins based on multi-scale characteristics fusion

  • Author

    Chen, Ruolei ; Wang, Kejun ; He, Bo ; Feng, Weixing

  • Author_Institution
    Coll. of Autom., Harbin Eng. Univ., Harbin, China
  • Volume
    3
  • fYear
    2011
  • fDate
    15-17 Oct. 2011
  • Firstpage
    1588
  • Lastpage
    1591
  • Abstract
    Due to the importance of functions, it has already become a hotter and hotter topic to predict intrinsically disordered regions in proteins. To consider the information from long and short disordered regions simultaneously and accurately predict both of the two regions, a new method based on multi-scale characteristics fusion was proposed in this article. First, characteristics based on different scales were extracted from amino acid sequences and used to build several basic models by SVM. Then the Q-statistics method was introduced to measure the diversity among all basic models. The basic models with the larger diversity were chose out and built the integrated predictor. Finally, majority voting method was used to make decision fusion and output the final predicting results. Subsequent simulation suggests that the proposed method can consider the information from the long and short disordered regions simultaneously and get a good predicting accuracy for IDPs, especially short disordered regions.
  • Keywords
    biology computing; proteins; support vector machines; Q-statistics method; SVM; amino acid sequences; decision fusion; diversity; intrinsically disordered proteins; intrinsically disordered regions; majority voting method; multiscale characteristics fusion; Accuracy; Amino acids; Educational institutions; Predictive models; Proteins; Support vector machines; Tin; intrinsically disordered regions; multi-scale; prediction; protein;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Biomedical Engineering and Informatics (BMEI), 2011 4th International Conference on
  • Conference_Location
    Shanghai
  • Print_ISBN
    978-1-4244-9351-7
  • Type

    conf

  • DOI
    10.1109/BMEI.2011.6098634
  • Filename
    6098634