Title :
2D-GE spot detection combining multidirectional texture and spatial intensity cues
Author :
Zacharia, E. ; Kostopoulou, Eirini ; Maroulis, Dimitris ; Anagnou, Nicholas P. ; Pappa, Kalliopi I.
Author_Institution :
Dept. of Inf. & Telecommun., Nat. & Kapodistrian Univ. of Athens, Ilisia, Greece
Abstract :
Spot detection is a challenging task of 2D Gel Electrophoresis image analysis. The available software packages and techniques miss some of the protein spots while they detect a high number of spurious spots. This paper introduces a novel approach for the detection of protein spots on 2D gel images which is based on multidirectional texture and spatial intensity information. The proposed approach is compared with two commercial software packages using real 2D-GE images. The outcome demonstrates that the proposed approach outperforms the two software packages; it detects almost all of real protein spots and a low number of spurious spots.
Keywords :
bioinformatics; electrophoresis; image texture; object detection; proteins; software packages; 2D gel electrophoresis image analysis; 2D-GE spot detection; multidirectional texture; protein spots; software packages; spatial intensity cues; Filtering; Image segmentation; Protein engineering; Proteins; Proteomics; Software packages; Transforms;
Conference_Titel :
Bioinformatics and Bioengineering (BIBE), 2013 IEEE 13th International Conference on
Conference_Location :
Chania
DOI :
10.1109/BIBE.2013.6701555