Title :
Some results on topological colored motifs in metabolic networks
Author :
Araujo, Ernesto ; Stefanes, Marco A.
Author_Institution :
Fac. de Comput., Univ. Fed. de Mato Grosso do Sul, Dourados, Brazil
Abstract :
In this work, we address the topological colored motif search problem in metabolic networks. This problem is a concern in biology, which seeks to describe the functions and the evolution of metabolism. Recently, several variations of this problem have been studied. Here, we present some hardness results for finding motifs. Furthermore, we describe the first polynomial algorithm for the case in which the motif is a colorful tree. We also detail a data structure that allows finding all of these types of motifs in a metabolic network.
Keywords :
data structures; evolution (biological); graph colouring; hardness; molecular biophysics; molecular configurations; polynomials; trees (mathematics); colorful tree; data structure; hardness; metabolic networks; metabolism evolution; polynomial algorithm; topological colored motifs; Biochemistry; Color; Data structures; Image color analysis; Polynomials; Search problems;
Conference_Titel :
Bioinformatics and Bioengineering (BIBE), 2013 IEEE 13th International Conference on
Conference_Location :
Chania
DOI :
10.1109/BIBE.2013.6701650