Title :
Analysis of DFNA5´s three distinct mutations by Apriori, decision tree
Author :
Kyoungmin Kim ; Jaehoon Sung ; Seokyoon Chang ; Taeseon Yoon
Author_Institution :
Dept. of Int., Hankuk Acad. of Foreign Studies (HAFS), Yongin, South Korea
Abstract :
DFNA5´s mutations are known as the reason of autosomal dominant non-syndromic hearing loss (ADNSHL). To date, DFNA5 has been mostly experimented by particular families´ DNA samples. By using three homo sapiens deafness sequences provided by ncbi, we investigated amino acid sequences in order to analyze relationships among mutants. We used apriori algorithm to find common amino acid which indicates a particular feature and decision tree C5.0 algorithm in order to discover the difference and what amino acid is likely to appear in each position. As a result, Leucine, Glycine, and Alanine were the most crucial amino acids to explain the relationship. This result made us to speculate that variant 2 and 3 are derived from variant 1. Hereby, our experiment suggests features of these mutants and arouses further research about how these amino acids affect the hearing-impaired.
Keywords :
bioinformatics; decision trees; genetics; organic compounds; C5.0 algorithm; DFNA5 gene; DFNA5 mutations; alanine; amino acid sequences; apriori algorithm; decision tree; glycine; hearing-impaired; leucine; mutants; Amino acids; Auditory system; Bioinformatics; DNA; Data analysis; Decision trees; Proteins; Apriori; C 5.0; DFNA5; Decision Tree; non-syndromic hearing loss;
Conference_Titel :
Big Data and Smart Computing (BigComp), 2015 International Conference on
Conference_Location :
Jeju
DOI :
10.1109/35021BIGCOMP.2015.7072853