Title :
Visualization of molecular properties at the qantum mechanical level using blender
Author :
Haschka, Thomas ; Dauchez, Manuel ; Henon, Eric
Abstract :
Molecular visualization is an active and ever expanding subject of research. Most of the visualization methods are however applied on large biological molecules. The representation of smaller molecules on a quantum mechanical level is to date both cumbersome and rare. We present herein a workflow that allows arbitrary volumetric datasets obtained from quantum mechanical calculations to be visualized. Using the open source Blender software and in house developed scripts we show how a researcher might create high resolution publication ready images from quantum mechanical data, such as electron density, electrostatic potential or spin density. This approach currently beats standard molecular visualization tools such as VMD and PyMOL as it allows to visualize higher resolution volumetric datasets and hence, more complex molecules and molecular properties. Further we boast superior image quality due to the availability of high quality volumetric absorbtion, scattering and emission shaders in Blender. Finally we show how a today´s state of the art cloud platforms provide the computational power required to create high quality visual representions.
Keywords :
computer animation; data visualisation; electron density; graphical user interfaces; molecular biophysics; physics computing; public domain software; arbitrary volumetric datasets; cloud platforms; complex molecules; electron density; electrostatic potential; emission shaders; high-quality volumetric absorbtion; high-resolution volumetric datasets; image qualitity; large-biological molecules; molecular properties; molecular property visualization; molecular visualization; open source Blender software; qantum mechanical level; scattering; smaller-molecule representation; spin density; visual representions; Data visualization; Engines; Image color analysis; Image resolution; Quantum mechanics; Rendering (computer graphics); Software; I.3.7 [Computer Graphics]: Three-Dimensional Graphics and Realism-Animation I.3.m [Computer Graphics]: Three-Dimensional Graphics and Realism-Miscellaneous I.6.8 [Simulation and Modeling]: Types of Simulation-Visual;
Conference_Titel :
Virtual and Augmented Reality for Molecular Science (VARMS@IEEEVR), 2015 IEEE 1st International Workshop on
Conference_Location :
Arles
DOI :
10.1109/VARMS.2015.7151719