Title : 
Detection and estimation of membrane diffusion during exocytosis in TIRFM image sequences
         
        
            Author : 
Basset, A. ; Bouthemy, P. ; Boulanger, J. ; Waharte, F. ; Kervrann, C. ; Salamero, J.
         
        
            Author_Institution : 
Centre Rennes - Bretagne Atlantique, Inria, Rennes, France
         
        
        
        
        
        
            Abstract : 
Assessing the dynamics of plasma membrane diffusion processes in live cell fluorescence microscopy is of paramount interest to understand cell mechanisms. We propose a new method to detect vesicle fusion events, and estimate the associated diffusion coefficients in image sequences of total internal reflection fluorescence microscopy (TIRFM). In contrast to usual approaches, a diffusion coefficient is locally estimated for each detected fusing vesicle. We first detect the membrane fusion events and then select the diffusion configurations among them with a correlation test. To estimate the diffusion coefficient, a geometric model is fitted to the detected spot directly in the 2D+t subvolume. Quantitative results demonstrate the accuracy of the proposed method.
         
        
            Keywords : 
biodiffusion; biological techniques; biology computing; biomembrane transport; fluorescence; image sequences; optical microscopy; 2D+t subvolume; TIRFM image sequences; cell mechanisms; correlation test; diffusion coefficients; diffusion configurations; exocytosis; geometric model; live cell fluorescence microscopy; membrane fusion events; plasma membrane diffusion processes; total internal reflection fluorescence microscopy; vesicle fusion event detection; Biomembranes; Correlation; Estimation; Image sequences; Microscopy; Plasmas; Proteins; Event detection; TIRFM; diffusion estimation; ex-ocytosis dynamics; lateral diffusion in membrane;
         
        
        
        
            Conference_Titel : 
Biomedical Imaging (ISBI), 2015 IEEE 12th International Symposium on
         
        
            Conference_Location : 
New York, NY
         
        
        
            DOI : 
10.1109/ISBI.2015.7163968