Title :
GT-kernelPLS: Game theory based hybrid gene selection method for microarray data classification
Author :
Shakoor, Adnan ; Qinke Peng ; Shiquan Sun ; Xiao Wang ; Jia Lv
Author_Institution :
Sch. of Electron. & Inf. Eng., Xi´an Jiaotong Univ., Xi´an, China
Abstract :
Gene selection prior to classification has been an important topic in bioinformatics, since last decade. Small sample size and high dimensionality in microarray data pose great challenges for performing efficient classification. In this paper we propose efficient hybrid method (GTkernelPLS) with a combination of wrapper like technique coalitional game theory and kernel partial least square (kernelPLS) filter method. Experimental results on ten microarray data sets ensure that GTkernelPLS achieve higher accuracy than several state of the art feature selection methods, and it exhibits a reasonable execution time, even for the data sets having more than twenty thousand genes.
Keywords :
bioinformatics; game theory; least squares approximations; pattern classification; GTkernelPLS; bioinformatics; coalitional game theory; game theory based hybrid gene selection method; kernel partial least square filter method; kernelPLS filter method; microarray data classification; microarray data sets; small sample size; Accuracy; Error analysis; Filtering algorithms; Filtering theory; Game theory; Kernel; Time complexity; KernelPLS; contribution-selection algorithm; game theory; hybrid method;
Conference_Titel :
Software Engineering, Artificial Intelligence, Networking and Parallel/Distributed Computing (SNPD), 2015 16th IEEE/ACIS International Conference on
Conference_Location :
Takamatsu
DOI :
10.1109/SNPD.2015.7176202