• DocumentCode
    80961
  • Title

    The Depth Problem: Identifying the Most Representative Units in a Data Group

  • Author

    Irigoien, Itziar ; Mestres, Francesc ; Arenas, Concepcion

  • Author_Institution
    Dept. of Comput. Sci. & Artificial Intell., Univ. of the Basque Country, Donostia, Spain
  • Volume
    10
  • Issue
    1
  • fYear
    2013
  • fDate
    Jan.-Feb. 2013
  • Firstpage
    161
  • Lastpage
    172
  • Abstract
    This paper presents a solution to the problem of how to identify the units in groups or clusters that have the greatest degree of centrality and best characterize each group. This problem frequently arises in the classification of data such as types of tumor, gene expression profiles or general biomedical data. It is particularly important in the common context that many units do not properly belong to any cluster. Furthermore, in gene expression data classification, good identification of the most central units in a cluster enables recognition of the most important samples in a particular pathological process. We propose a new depth function that allows us to identify central units. As our approach is based on a measure of distance or dissimilarity between any pair of units, it can be applied to any kind of multivariate data (continuous, binary or multiattribute data). Therefore, it is very valuable in many biomedical applications, which usually involve noncontinuous data, such as clinical, pathological, or biological data sources. We validate the approach using artificial examples and apply it to empirical data. The results show the good performance of our statistical approach.
  • Keywords
    bioinformatics; biological techniques; biomedical engineering; data analysis; pattern classification; pattern clustering; statistical analysis; binary data; biological data sources; biomedical applications; centrality degree; clinical data sources; data group; depth problem; gene expression data classification; gene expression profiles; general biomedical data; most representative units; multiattribute data; multivariate data; noncontinuous data; pathological data sources; statistical approach; tumor types; Bioinformatics; Computational biology; Context; Covariance matrix; Gaussian distribution; Gene expression; Kernel; Cluster analysis; central unit; data depth; depth function; gene expression data; geometric variability; kernel; proximity function; Algorithms; Cluster Analysis; Computational Biology; Computer Simulation; Databases, Factual; Gene Expression Profiling; Humans; Models, Biological; Neoplasms; Reproducibility of Results;
  • fLanguage
    English
  • Journal_Title
    Computational Biology and Bioinformatics, IEEE/ACM Transactions on
  • Publisher
    ieee
  • ISSN
    1545-5963
  • Type

    jour

  • DOI
    10.1109/TCBB.2012.147
  • Filename
    6365622