A biosequence processor based on free-space optical interconnect

Author

Ao, Tao ; Hartinger, Klaus ; Alluri, Preetam ; Wilmsen, Carl

Author_Institution

Dept. of Electr. & Comput. Eng., Colorado State Univ., Fort Collins, CO, USA

Volume

9

Issue

2

fYear

2003

Firstpage

565

Lastpage

570

Abstract

Biological sequence analysis requires a large amount of computing capabilities, some of which goes well beyond current electronic-based information processing systems. A novel parallel processing biological sequence processor based on free-space optical interconnects (FSOI) has been developed to verify the feasibility of such FSOI systems. Silicon photodetectors were designed into the standard CMOS integrated circuit as optical input. The processor has been fabricated with AMI 0.5 μm CMOS technology via MOSIS service. Electronic and optical testings have been conducted. The system is shown to operate reliably with laser power as low as a few miniwatts.

Keywords

CMOS digital integrated circuits; application specific integrated circuits; biological techniques; biology computing; digital signal processing chips; integrated circuit design; integrated circuit testing; integrated optoelectronics; optical interconnections; parallel processing; photodetectors; sequences; 0.5 micron; AMI 0.5 μm CMOS technology; MOSIS service; Si photodetectors; Smith-Waterman algorithm-specific ASIC design; biological sequence analysis; biosequence processor; electronic testing; free-space optical interconnect; low laser power; optical testing; parallel processing biological sequence processor; Biology computing; Biomedical optical imaging; CMOS technology; Information analysis; Information processing; Optical interconnections; Parallel processing; Photodetectors; Power system reliability; Silicon;

fLanguage

English

Journal_Title

Selected Topics in Quantum Electronics, IEEE Journal of

Publisher

ieee

ISSN

1077-260X

Type

jour

DOI

10.1109/JSTQE.2003.812501

Filename

1239023