• DocumentCode
    83304
  • Title

    Microarray Image Denoising Using Complex Gaussian Scale Mixtures of Complex Wavelets

  • Author

    Srinivasan, Lakshminarayan ; Rakvongthai, Yothin ; Oraintara, Soontorn

  • Author_Institution
    Dept. of Electr. Eng., Univ. of Texas at Arlington, Arlington, TX, USA
  • Volume
    18
  • Issue
    4
  • fYear
    2014
  • fDate
    Jul-14
  • Firstpage
    1423
  • Lastpage
    1430
  • Abstract
    Microarray images when contaminated with noise may severely affect the detection and quantification of gene expression. In this paper, we propose to use the complex Gaussian scale mixture (CGSM) model in complex wavelet domain for noise reduction in complementary DNA microarray images. Based on the joint information in the red and green channel microarray images, we model the complex wavelet coefficients of the channel images jointly using the CGSM, and subsequently perform image denoising using Bayes least square estimator in complex wavelet domain. The experimental results show that using the CGSM of complex wavelet coefficients provides better noise reduction of microarray images compared to other complex wavelet-based models.
  • Keywords
    Bayes methods; biological techniques; biology computing; genetics; image denoising; lab-on-a-chip; least squares approximations; molecular biophysics; Bayes least square estimator; CGSM model; complementary DNA microarray images; complex Gaussian scale mixtures; complex wavelet domain; complex wavelets; gene expression detection; gene expression quantification; green channel microarray images; microarray image denoising; noise contamination; noise reduction; red channel microarray images; Joints; Noise reduction; PSNR; Vectors; Wavelet transforms; Complementary DNA (cDNA) microarray image; complex gaussian scale mixtures (CGSMs); complex wavelet transform; denoising;
  • fLanguage
    English
  • Journal_Title
    Biomedical and Health Informatics, IEEE Journal of
  • Publisher
    ieee
  • ISSN
    2168-2194
  • Type

    jour

  • DOI
    10.1109/JBHI.2014.2318279
  • Filename
    6800018