DocumentCode
83304
Title
Microarray Image Denoising Using Complex Gaussian Scale Mixtures of Complex Wavelets
Author
Srinivasan, Lakshminarayan ; Rakvongthai, Yothin ; Oraintara, Soontorn
Author_Institution
Dept. of Electr. Eng., Univ. of Texas at Arlington, Arlington, TX, USA
Volume
18
Issue
4
fYear
2014
fDate
Jul-14
Firstpage
1423
Lastpage
1430
Abstract
Microarray images when contaminated with noise may severely affect the detection and quantification of gene expression. In this paper, we propose to use the complex Gaussian scale mixture (CGSM) model in complex wavelet domain for noise reduction in complementary DNA microarray images. Based on the joint information in the red and green channel microarray images, we model the complex wavelet coefficients of the channel images jointly using the CGSM, and subsequently perform image denoising using Bayes least square estimator in complex wavelet domain. The experimental results show that using the CGSM of complex wavelet coefficients provides better noise reduction of microarray images compared to other complex wavelet-based models.
Keywords
Bayes methods; biological techniques; biology computing; genetics; image denoising; lab-on-a-chip; least squares approximations; molecular biophysics; Bayes least square estimator; CGSM model; complementary DNA microarray images; complex Gaussian scale mixtures; complex wavelet domain; complex wavelets; gene expression detection; gene expression quantification; green channel microarray images; microarray image denoising; noise contamination; noise reduction; red channel microarray images; Joints; Noise reduction; PSNR; Vectors; Wavelet transforms; Complementary DNA (cDNA) microarray image; complex gaussian scale mixtures (CGSMs); complex wavelet transform; denoising;
fLanguage
English
Journal_Title
Biomedical and Health Informatics, IEEE Journal of
Publisher
ieee
ISSN
2168-2194
Type
jour
DOI
10.1109/JBHI.2014.2318279
Filename
6800018
Link To Document